C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3 domain and tetratricopeptide repeats 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051720 Sh3tc2-201 ENSMUSG00000045629 10090 + 18:61953075-62015715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051720 1.764±0.51 1.080±0.79 5.300±2.35 0.315±0.17 0.561±0.24 0.404±0.06 1.070±0.34 5.572±1.10 1.124±1.14 5.672±1.61 0.284±0.12 2.184±1.54 6.891±7.08 1.805±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZC CIL_0007ZC_0002 VISTA 18:61351102-61954077
CIL_0001F7 CIL_0001F7_0002 CGP 18:61799395-62015715
CIL_0001F6 CIL_0001F6_0002 CGP 18:61953075-62179959

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323829 SH3TC2-004 nonsense_mediated_decay Homo_sapiens 0 2623
ENST00000502274 SH3TC2-011 protein_coding Homo_sapiens 0 466
ENST00000504517 SH3TC2-009 nonsense_mediated_decay Homo_sapiens 0 2588
ENST00000504690 SH3TC2-012 nonsense_mediated_decay Homo_sapiens 0 3354
ENST00000510350 SH3TC2-015 processed_transcript Homo_sapiens 0 252
ENST00000510779 SH3TC2-010 nonsense_mediated_decay Homo_sapiens 0 2494
ENST00000511307 SH3TC2-003 nonsense_mediated_decay Homo_sapiens 0 2182
ENST00000512049 SH3TC2-005 protein_coding Homo_sapiens 0 3469
ENST00000513604 SH3TC2-007 nonsense_mediated_decay Homo_sapiens 0 1495
ENST00000515229 SH3TC2-016 processed_transcript Homo_sapiens 0 396
ENST00000515425 SH3TC2-001 protein_coding Homo_sapiens 0 3570

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