C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052204 Nipa1-001 ENSMUSG00000047037 10090 - 7:55977567-56019954 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052204 4.071±0.50 3.527±0.25 7.125±0.71 9.464±2.25 2.260±0.79 3.103±0.23 2.299±0.15 2.858±0.57 4.264±4.40 8.606±0.24 0.836±0.07 5.712±2.18 1.335±0.52 0.619±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006L7 CIL_0006L7_0002 CGP 7:55931287-56019954
CIL_000391 CIL_000391_0002 CGP 7:55977567-56231794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005769 IDA early endosome
GO:0005886 IDA plasma membrane
GO:0015095 IEA magnesium ion transmembrane transporter activity
GO:0015693 IDA magnesium ion transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337435 NIPA1-001 protein_coding Homo_sapiens 0 1386
ENST00000437912 NIPA1-004 protein_coding Homo_sapiens 0 1177
ENST00000557930 NIPA1-007 nonsense_mediated_decay Homo_sapiens 0 492
ENST00000559448 NIPA1-002 nonsense_mediated_decay Homo_sapiens 0 1005
ENST00000560069 NIPA1-008 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000560105 NIPA1-006 retained_intron Homo_sapiens 1e-37 159
ENST00000561183 NIPA1-003 protein_coding Homo_sapiens 0 1155

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