C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052248 Eef1g-001 ENSMUSG00000071644 10090 + 19:8967041-8978479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052248
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052248 99.026±49.30 47.169±13.40 114.563±0.00 78.207±30.69 54.881±15.87 47.334±13.11 56.442±3.90 55.532±18.66 79.890±58.93 44.995±14.58 148.481±48.72 107.125±42.84 152.773±88.17 175.054±67.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760
CIL_0001Z2 CIL_0001Z2_0002 CGP 19:8967041-9076919

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0005634 IEA nucleus
GO:0006414 IEA translational elongation
GO:0009615 IEA response to virus
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000078522 eef1g-001 protein_coding Danio_rerio 0 684
ENST00000329251 EEF1G-001 protein_coding Homo_sapiens 0 2052
ENST00000421044 EEF1GP3-001 processed_pseudogene Homo_sapiens 0 1190
ENST00000434365 EEF1GP5-001 processed_pseudogene Homo_sapiens 0 1554
ENST00000457231 EEF1GP1-001 processed_pseudogene Homo_sapiens 0 1288
ENST00000457942 CHCHD3-006 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000496634 MIR3654-001 nonsense_mediated_decay Homo_sapiens 0 1890
ENST00000524420 EEF1G-004 processed_transcript Homo_sapiens 0 448
ENST00000525340 EEF1G-002 retained_intron Homo_sapiens 0 1890
ENST00000526409 MIR3654-004 retained_intron Homo_sapiens 0 1892
ENST00000532986 EEF1G-003 processed_transcript Homo_sapiens 0 647

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