C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052514 Slc38a9-201 ENSMUSG00000047789 10090 + 13:112660766-112738743 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052514 1.381±0.40 1.439±0.82 2.465±0.50 1.295±0.26 0.859±0.35 0.668±0.28 1.030±0.11 1.150±0.15 1.783±0.84 0.751±0.17 0.806±0.37 1.563±0.72 1.115±0.68 4.638±2.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YR CIL_0001YR_0002 CGP 13:112598333-112738743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318672 SLC38A9-201 protein_coding Homo_sapiens 0 2165
ENST00000396865 SLC38A9-001 protein_coding Homo_sapiens 0 2165
ENST00000416547 SLC38A9-202 protein_coding Homo_sapiens 0 1895
ENST00000502247 SLC38A9-017 protein_coding Homo_sapiens 0 252
ENST00000503817 SLC38A9-021 protein_coding Homo_sapiens 0 532
ENST00000503891 SLC38A9-010 protein_coding Homo_sapiens 0 483
ENST00000505708 SLC38A9-008 nonsense_mediated_decay Homo_sapiens 0 1452
ENST00000507447 SLC38A9-018 retained_intron Homo_sapiens 0 453
ENST00000508124 SLC38A9-002 nonsense_mediated_decay Homo_sapiens 0 1895
ENST00000511233 SLC38A9-006 protein_coding Homo_sapiens 0 880
ENST00000512208 SLC38A9-016 protein_coding Homo_sapiens 0 878
ENST00000512595 SLC38A9-005 protein_coding Homo_sapiens 0 1072
ENST00000513993 SLC38A9-012 protein_coding Homo_sapiens 0 322
ENST00000514806 SLC38A9-019 retained_intron Homo_sapiens 0 641
ENST00000515159 SLC38A9-007 retained_intron Homo_sapiens 0 911
ENST00000515629 SLC38A9-004 protein_coding Homo_sapiens 0 2082
ENST00000515754 SLC38A9-022 processed_transcript Homo_sapiens 0 459
ENST00000524030 SLC38A9-024 processed_transcript Homo_sapiens 0 405
ENST00000524154 SLC38A9-023 retained_intron Homo_sapiens 0 303

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