C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oligodendrocyte transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053225 Olig3-201 ENSMUSG00000045591 10090 + 10:19356560-19358606 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungOvaryPlacentaTestisENSMUST00000053225
Transcript ID Adipose Brain Breast Heart Lung Ovary Placenta Testis
ENSMUST00000053225 0.092±0.04 1.179±0.86 0.042±0.01 0.040±0.00 0.215±0.10 0.521±0.20 0.003±0.00 0.054±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JD CIL_0008JD_0002 VISTA 10:18777703-19380447
CIL_0007M8 CIL_0007M8_0002 UCNEbase 10:19265307-19485851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0010468 IMP regulation of gene expression
GO:0021520 IMP spinal cord motor neuron cell fate specification
GO:0021522 IGI spinal cord motor neuron differentiation
GO:0046983 IEA protein dimerization activity
GO:0097476 IMP spinal cord motor neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367734 OLIG3-001 protein_coding Homo_sapiens 0 1954
ENST00000370346 BHLHE23-201 protein_coding Homo_sapiens 2e-25 121
ENST00000612929 BHLHE23-001 protein_coding Homo_sapiens 2e-25 121

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