C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ajuba LIM protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054487 Ajuba-201 ENSMUSG00000022178 10090 - 14:54567469-54577661 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054487
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054487 10.858±4.28 16.238±1.39 13.351±6.00 3.652±2.31 5.233±1.85 2.555±0.58 1.675±0.33 8.320±1.26 3.924±1.18 18.548±1.65 0.658±0.20 17.130±4.26 13.329±8.47 2.863±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ZP CIL_0001ZP_0002 CGP 14:54541785-54577661
CIL_0002ZR CIL_0002ZR_0002 CGP 14:54567469-54605908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0001666 IEA response to hypoxia
GO:0003682 IDA chromatin binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005925 IDA focal adhesion
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0016339 IMP calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0030334 IDA regulation of cell migration
GO:0031328 IMP positive regulation of cellular biosynthetic process
GO:0031334 IEA positive regulation of protein complex assembly
GO:0033673 IDA negative regulation of kinase activity
GO:0033674 IDA positive regulation of kinase activity
GO:0034613 IMP cellular protein localization
GO:0035195 IEA gene silencing by miRNA
GO:0035313 IMP wound healing, spreading of epidermal cells
GO:0035331 ISS negative regulation of hippo signaling
GO:0043087 IMP regulation of GTPase activity
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043406 IDA positive regulation of MAP kinase activity
GO:0045294 IDA alpha-catenin binding
GO:0046474 IMP glycerophospholipid biosynthetic process
GO:0048041 IMP focal adhesion assembly
GO:0051015 IDA actin filament binding
GO:1900037 IEA regulation of cellular response to hypoxia
GO:2000637 ISS positive regulation of gene silencing by miRNA

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262713 AJUBA-001 protein_coding Homo_sapiens 0 1899
ENST00000361265 AJUBA-201 protein_coding Homo_sapiens 0 1899
ENST00000397388 AJUBA-002 protein_coding Homo_sapiens 0 684
ENST00000553592 AJUBA-008 protein_coding Homo_sapiens 0 521
ENST00000553736 AJUBA-004 protein_coding Homo_sapiens 0 366
ENST00000553911 AJUBA-006 protein_coding Homo_sapiens 0 193
ENST00000556731 AJUBA-005 protein_coding Homo_sapiens 0 521

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