C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-binding Rho activating protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054742 Abra-201 ENSMUSG00000042895 10090 - 15:41865293-41869720 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054742
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054742 0.072±0.05 0.065±0.00 0.049±0.04 0.028±0.01 6.383±0.27 0.178±0.10 8.059±0.73 0.282±0.24 0.016±0.02 1.145±0.49 24.145±5.06 0.076±0.05 0.054±0.02 0.318±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000609 CIL_000609_0002 CGP 15:41447482-41869720
CIL_0004T0 CIL_0004T0_0003 CGP 15:41865293-42676977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000060 IDA protein import into nucleus, translocation
GO:0003713 IDA transcription coactivator activity
GO:0003779 IDA actin binding
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0015629 IDA actin cytoskeleton
GO:0030016 IDA myofibril
GO:0030017 ISS sarcomere
GO:0035025 IDA positive regulation of Rho protein signal transduction
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311955 ABRA-001 protein_coding Homo_sapiens 0 1022

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