C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, regulatory (inhibitor) subunit 13B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054815 Ppp1r13b-201 ENSMUSG00000021285 10090 - 12:111828458-111908055 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054815 8.490±2.06 2.282±0.63 10.248±2.69 15.117±7.55 4.907±1.86 8.276±1.69 4.215±0.86 3.749±0.83 2.056±0.55 13.278±1.01 1.473±0.36 8.757±3.41 10.584±4.17 9.043±1.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X2 CIL_0006X2_0002 CGP 12:111814170-111908055
CIL_00019A CIL_00019A_0002 CGP 12:111828458-111966977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008134 IEA transcription factor binding
GO:0045786 IEA negative regulation of cell cycle
GO:0072332 ISS intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000047662 ppp1r13bb-001 protein_coding Danio_rerio 0 350
ENST00000202556 PPP1R13B-001 protein_coding Homo_sapiens 0 3613
ENST00000553739 PPP1R13B-010 protein_coding Homo_sapiens 0 237
ENST00000554106 PPP1R13B-008 processed_transcript Homo_sapiens 0 279
ENST00000554136 PPP1R13B-007 retained_intron Homo_sapiens 0 457
ENST00000555391 PPP1R13B-004 processed_transcript Homo_sapiens 0 2174
ENST00000555734 PPP1R13B-009 protein_coding Homo_sapiens 0 553
ENST00000556325 PPP1R13B-017 processed_transcript Homo_sapiens 0 516
ENST00000556597 PPP1R13B-003 nonsense_mediated_decay Homo_sapiens 0 1733
ENST00000557082 PPP1R13B-002 nonsense_mediated_decay Homo_sapiens 0 3158

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