C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, small subunit A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056228 Sptssa-201 ENSMUSG00000044408 10090 - 12:54645374-54656572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056228
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056228 62.183±12.61 240.399±20.71 44.638±6.82 28.061±18.30 56.339±22.43 78.922±29.98 19.518±4.55 57.583±3.68 62.047±26.77 83.047±21.21 11.246±1.33 111.498±52.50 19.084±10.63 15.092±6.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005R9 CIL_0005R9_0003 CGP 12:54178981-54656572
CIL_0008RR CIL_0008RR_0002 VISTA 12:54232609-54834941
CIL_0005RG CIL_0005RG_0003 CGP 12:54645374-54695897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 ISS serine C-palmitoyltransferase activity
GO:0005515 IEA protein binding
GO:0006665 IEA sphingolipid metabolic process
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0017059 ISS serine C-palmitoyltransferase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298130 SPTSSA-001 protein_coding Homo_sapiens 0 1179

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