C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycystic kidney disease 1 like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057344 Pkd1l3-201 ENSMUSG00000048827 10090 + 8:109614517-109670721 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENSMUST00000057344
Transcript ID Testis
ENSMUST00000057344 4.054±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098B CIL_00098B_0002 VISTA 8:109116597-109718209
CIL_00098E CIL_00098E_0002 VISTA 8:109136455-109737561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001581 IDA detection of chemical stimulus involved in sensory perception of sour taste
GO:0005261 IDA cation channel activity
GO:0005262 IBA calcium channel activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 ISS plasma membrane
GO:0006812 IDA cation transport
GO:0007218 IEA neuropeptide signaling pathway
GO:0008324 IDA cation transmembrane transporter activity
GO:0009986 IDA cell surface
GO:0016020 IBA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0033040 IDA sour taste receptor activity
GO:0050982 IBA detection of mechanical stimulus
GO:0070588 IBA calcium ion transmembrane transport
GO:0071468 IDA cellular response to acidic pH
GO:0098655 IDA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000620267 PKD1L3-001 protein_coding Homo_sapiens 0 1770

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