C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycystic kidney disease 1-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620267 PKD1L3-001 ENSG00000277481 9606 - 16:71929538-71999978 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000564 CIL_000564_0001 CGP 16:71845996-71931199
CIL_00098E CIL_00098E_0001 VISTA 16:71920667-72521926

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001581 ISS detection of chemical stimulus involved in sensory perception of sour taste
GO:0005216 IEA ion channel activity
GO:0005261 ISS cation channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006811 IEA ion transport
GO:0006812 ISS cation transport
GO:0007218 IEA neuropeptide signaling pathway
GO:0008324 ISS cation transmembrane transporter activity
GO:0009986 ISS cell surface
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0033040 ISS sour taste receptor activity
GO:0050915 IMP sensory perception of sour taste
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070588 IEA calcium ion transmembrane transport
GO:0071468 ISS cellular response to acidic pH
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057344 Pkd1l3-201 protein_coding Mus_musculus 0 1770
ENSMUST00000109242 Pkd1l3-202 protein_coding Mus_musculus 0 1770

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