C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057859 Frmd6-201 ENSMUSG00000048285 10090 + 12:70825514-70902232 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057859 10.684±3.68 9.266±0.80 19.823±1.57 3.982±0.54 10.724±2.97 6.312±0.35 7.281±1.18 3.063±0.18 1.095±0.42 17.443±1.73 2.407±0.90 9.976±2.30 14.438±3.64 1.729±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069M CIL_00069M_0003 CGP 12:70453095-70902232

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003383 IGI apical constriction
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0032970 IGI regulation of actin filament-based process
GO:0034613 IMP cellular protein localization
GO:0043296 IDA apical junction complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344768 FRMD6-002 protein_coding Homo_sapiens 0 2254
ENST00000356218 FRMD6-003 protein_coding Homo_sapiens 0 2102
ENST00000395718 FRMD6-001 protein_coding Homo_sapiens 0 2109
ENST00000554167 FRMD6-013 protein_coding Homo_sapiens 0 1945
ENST00000554495 FRMD6-015 retained_intron Homo_sapiens 0 436
ENST00000554778 FRMD6-012 protein_coding Homo_sapiens 0 279
ENST00000555936 FRMD6-014 protein_coding Homo_sapiens 0 575
ENST00000557405 FRMD6-017 protein_coding Homo_sapiens 0 379
ENST00000557522 FRMD6-004 retained_intron Homo_sapiens 0 331

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