C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058470 Polr2a-001 ENSMUSG00000005198 10090 - 11:69733997-69758637 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058470
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058470 10.646±5.35 11.219±3.29 6.986±3.01 13.591±4.98 8.351±3.04 10.417±0.79 5.080±0.47 10.650±1.28 7.482±4.67 16.780±1.37 7.324±0.75 10.646±4.31 17.262±7.97 20.193±8.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000974 ISS Prp19 complex
GO:0001055 IBA RNA polymerase II activity
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0033120 ISS positive regulation of RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077495 polr2a-001 protein_coding Danio_rerio 0 3932
ENST00000572844 POLR2A-002 protein_coding Homo_sapiens 0 2425
ENST00000574158 POLR2A-011 retained_intron Homo_sapiens 0 399
ENST00000575547 POLR2A-006 retained_intron Homo_sapiens 0 691
ENST00000576718 POLR2A-007 retained_intron Homo_sapiens 0 477
ENST00000576952 POLR2A-005 retained_intron Homo_sapiens 0 296
ENST00000617998 POLR2A-001 protein_coding Homo_sapiens 0 7928
ENST00000621442 POLR2A-201 protein_coding Homo_sapiens 0 7915

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