C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: frizzled homolog 4 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058755 Fzd4-201 ENSMUSG00000049791 10090 + 7:89404366-89410110 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonLiverLungOvaryPlacentaTestisENSMUST00000058755
Transcript ID Adrenal Bladder Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000058755 16.416±6.96 5.431±0.00 22.075±10.48 4.512±1.10 3.078±1.50 12.924±2.43 14.357±2.13 1.785±1.62 0.425±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008U2 CIL_0008U2_0002 VISTA 7:89154519-89757634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001553 IMP luteinization
GO:0001568 IMP blood vessel development
GO:0001570 IMP vasculogenesis
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007223 IEA Wnt signaling pathway, calcium modulating pathway
GO:0007605 IMP sensory perception of sound
GO:0009986 IEA cell surface
GO:0010812 IMP negative regulation of cell-substrate adhesion
GO:0016021 IEA integral component of membrane
GO:0016055 IEA Wnt signaling pathway
GO:0017147 IPI Wnt-protein binding
GO:0019955 IPI cytokine binding
GO:0030165 IBA PDZ domain binding
GO:0030947 IMP regulation of vascular endothelial growth factor receptor signaling pathway
GO:0031625 IEA ubiquitin protein ligase binding
GO:0031987 IMP locomotion involved in locomotory behavior
GO:0034446 IMP substrate adhesion-dependent cell spreading
GO:0035426 IDA extracellular matrix-cell signaling
GO:0042701 IMP progesterone secretion
GO:0042803 IEA protein homodimerization activity
GO:0042813 IPI Wnt-activated receptor activity
GO:0042995 IBA cell projection
GO:0043507 IGI positive regulation of JUN kinase activity
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0060070 IDA canonical Wnt signaling pathway
GO:0061299 IGI retina vasculature morphogenesis in camera-type eye
GO:0061301 IMP cerebellum vasculature morphogenesis
GO:0061304 IMP retinal blood vessel morphogenesis
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000528769 PRSS23-007 processed_transcript Homo_sapiens 0 289
ENST00000531380 FZD4-001 protein_coding Homo_sapiens 0 2471
ENST00000531521 PRSS23-006 processed_transcript Homo_sapiens 0 730
ENST00000532234 PRSS23-002 nonsense_mediated_decay Homo_sapiens 0 1814
ENST00000533902 PRSS23-004 protein_coding Homo_sapiens 0 1818

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