C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stearoyl-coenzyme A desaturase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058856 Scd4-001 ENSMUSG00000050195 10090 + 19:44333092-44346743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058856
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058856 0.364±0.07 0.177±0.05 0.112±0.05 0.120±0.02 0.166±0.06 0.262±0.06 3.883±1.25 0.120±0.02 0.043±0.02 0.430±0.13 0.036±0.03 0.248±0.10 0.437±0.49 0.191±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0002 VISTA 19:44214132-44815870
CIL_00082U CIL_00082U_0002 VISTA 19:44330970-44933041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004768 IDA stearoyl-CoA 9-desaturase activity
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0006633 IDA fatty acid biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370355 SCD-001 protein_coding Homo_sapiens 0 800
ENST00000455244 SCDP1-001 processed_pseudogene Homo_sapiens 0 691

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