C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stearoyl-CoA desaturase (delta-9-desaturase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370355 SCD-001 ENSG00000099194 9606 + 10:100347124-100364834 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370355
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370355 62.220±0.00 13.743±0.00 206.879±143.10 921.563±890.76 62.315±49.79 6.454±3.86 99.238±95.51 140.027±41.51 31.622±2.08 3.559±3.29 78.320±32.93 12.329±2.75 29.791±9.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_0005E3 CIL_0005E3_0001 CGP 10:100288154-100364834
CIL_00082U CIL_00082U_0001 VISTA 10:100312457-100914449
CIL_00082V CIL_00082V_0001 VISTA 10:100315129-100915721
CIL_0005E0 CIL_0005E0_0001 CGP 10:100347124-100483744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004768 IEA stearoyl-CoA 9-desaturase activity
GO:0005506 IEA iron ion binding
GO:0005783 IDA endoplasmic reticulum
GO:0006629 IEA lipid metabolic process
GO:0006633 IEA fatty acid biosynthetic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026221 Scd2-201 protein_coding Mus_musculus 0 1098
ENSMUST00000041331 Scd1-201 protein_coding Mus_musculus 0 987
ENSMUST00000026220 Scd3-201 protein_coding Mus_musculus 0 966
ENSMUST00000058856 Scd4-001 protein_coding Mus_musculus 0 800

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