C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059045 Exosc4-001 ENSMUSG00000034259 10090 + 15:76327397-76330677 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000059045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000059045 25.886±1.22 48.951±6.28 17.636±1.07 17.390±9.61 31.467±10.76 29.735±2.02 13.342±2.62 30.860±4.89 22.511±4.60 24.325±3.05 8.036±1.14 43.824±20.33 10.074±4.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026X CIL_00026X_0002 CGP 15:76296597-76330677
CIL_00026Y CIL_00026Y_0002 CGP 15:76327397-76334907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000178 ISS exosome (RNase complex)
GO:0000460 IEA maturation of 5.8S rRNA
GO:0000956 IEA nuclear-transcribed mRNA catabolic process
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0017091 IEA AU-rich element binding
GO:0030307 IEA positive regulation of cell growth
GO:0035327 IEA transcriptionally active chromatin
GO:0045006 IEA DNA deamination
GO:0051607 IEA defense response to virus
GO:0071028 IEA nuclear mRNA surveillance
GO:0071044 ISS histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316052 EXOSC4-001 protein_coding Homo_sapiens 0 861
ENST00000525936 EXOSC4-002 protein_coding Homo_sapiens 0 337

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