C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059080 Rps21-001 ENSMUSG00000039001 10090 + 2:180257377-180258445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059080
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059080 1257.841±517.89 550.231±144.25 1764.370±148.89 775.076±290.23 1241.364±514.80 1405.162±161.56 467.615±99.48 1031.062±47.56 891.054±571.43 1099.889±190.57 334.750±43.54 2011.369±574.48 1547.302±668.52 331.913±93.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DP CIL_0001DP_0002 CGP 2:180176373-180258445
CIL_0001DQ CIL_0001DQ_0002 CGP 2:180257377-180273496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA structural constituent of ribosome
GO:0005737 IEA cytoplasm
GO:0006414 IBA translational elongation
GO:0015935 IEA small ribosomal subunit
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0042274 IBA ribosomal small subunit biogenesis
GO:0043022 ISS ribosome binding
GO:0044822 IEA poly(A) RNA binding
GO:0047485 IEA protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343986 RPS21-001 protein_coding Homo_sapiens 0 350
ENST00000370562 RPS21-002 protein_coding Homo_sapiens 7.9874e-44 182
ENST00000370592 RPS21-003 protein_coding Homo_sapiens 0 263
ENST00000450116 RPS21-201 protein_coding Homo_sapiens 0 333
ENST00000492356 RPS21-004 processed_transcript Homo_sapiens 0 333

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