C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage gated channel, Shab-related subfamily, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059826 Kcnb1-001 ENSMUSG00000050556 10090 - 2:167103378-167188799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000059826
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000059826 5.279±1.46 3.335±0.65 3.643±0.00 3.410±1.35 1.138±0.18 3.986±0.39 0.596±0.18 0.119±0.09 2.043±0.35 3.028±1.01 1.390±0.08 0.472±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0002 VISTA 2:167024358-167627099
CIL_0006IT CIL_0006IT_0003 CGP 2:167103378-167240604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005249 ISO voltage-gated potassium channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005515 IPI protein binding
GO:0006813 ISO potassium ion transport
GO:0008076 IEA voltage-gated potassium channel complex
GO:0015271 IEA outward rectifier potassium channel activity
GO:0030425 IEA dendrite
GO:0032590 IEA dendrite membrane
GO:0032809 IEA neuronal cell body membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043025 IEA neuronal cell body
GO:0045211 IEA postsynaptic membrane
GO:0047485 IEA protein N-terminus binding
GO:0051259 IEA protein oligomerization
GO:0051260 IEA protein homooligomerization
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000084361 kcnb1-201 protein_coding Danio_rerio 0 959
ENSDART00000153673 kcnb1-001 protein_coding Danio_rerio 0 959
ENST00000371741 KCNB1-001 protein_coding Homo_sapiens 0 3044

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