C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC030336
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060175 BC030336-201 ENSMUSG00000046096 10090 + 7:120677620-120734854 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060175 4.254±0.43 9.260±2.14 1.496±0.73 2.360±0.93 2.793±0.68 1.186±0.26 2.329±0.46 3.333±0.14 2.404±0.84 4.920±0.10 1.995±0.66 3.098±0.86 1.979±0.95 3.365±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000556 CIL_000556_0002 CGP 7:120659296-120734854
CIL_0003F2 CIL_0003F2_0002 CGP 7:120677620-120805742

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331057 C16orf52-001 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000416882 RP11-5P18.1-001 processed_pseudogene Homo_sapiens 0 374
ENST00000542527 C16orf52-006 protein_coding Homo_sapiens 0 2300
ENST00000562186 C16orf52-004 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000562695 C16orf52-005 protein_coding Homo_sapiens 0 564
ENST00000567004 C16orf52-002 protein_coding Homo_sapiens 0 346
ENST00000569656 C16orf52-201 protein_coding Homo_sapiens 0 625

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