C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: feminization 1 homolog a (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060253 Fem1a-201 ENSMUSG00000043683 10090 + 17:56256793-56263608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060253 6.896±3.25 24.744±0.37 6.970±0.11 7.345±1.09 16.301±6.27 15.216±5.47 33.022±3.00 11.072±2.65 6.566±2.60 11.622±5.24 20.081±15.34 17.562±8.14 3.492±1.22 2.432±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00028D CIL_00028D_0002 CGP 17:56186682-56263608
CIL_00028H CIL_00028H_0002 CGP 17:56256793-56276786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0016567 IEA protein ubiquitination
GO:0043407 IDA negative regulation of MAP kinase activity
GO:0050728 IGI negative regulation of inflammatory response
GO:0051438 ISS regulation of ubiquitin-protein transferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000097991 fem1a-201 protein_coding Danio_rerio 0 333
ENST00000269856 FEM1A-001 protein_coding Homo_sapiens 0 1094
ENST00000403722 FEM1AP3-001 processed_pseudogene Homo_sapiens 0 340
ENST00000431297 FEM1AP1-001 processed_pseudogene Homo_sapiens 0 686
ENST00000443167 FEM1AP4-001 processed_pseudogene Homo_sapiens 0 917
ENST00000581547 FEM1AP2-001 processed_pseudogene Homo_sapiens 0 924
ENST00000623131 CH507-210P18.3-001 processed_pseudogene Homo_sapiens 0 680

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