C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: loss of heterozygosity, 12, chromosomal region 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062755 Loh12cr1-001 ENSMUSG00000042992 10090 + 6:134640940-134711184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062755 6.990±0.29 16.207±0.77 7.778±1.15 8.523±2.65 7.457±2.62 5.978±0.26 4.565±0.42 6.152±0.90 4.860±0.96 5.426±0.54 6.784±2.06 10.445±2.95 3.284±1.03 2.839±1.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KA CIL_0000KA_0002 CGP 6:134609210-134711184
CIL_0003I2 CIL_0003I2_0002 CGP 6:134639627-134792625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298571 LOH12CR1-002 protein_coding Homo_sapiens 0 448
ENST00000314565 LOH12CR1-001 protein_coding Homo_sapiens 0 688
ENST00000542728 LOH12CR1-003 protein_coding Homo_sapiens 0 616
ENST00000543990 LOH12CR1-004 retained_intron Homo_sapiens 0 425

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