C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCAAT/enhancer binding protein (C/EBP), epsilon
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064290 Cebpe-201 ENSMUSG00000052435 10090 - 14:54710363-54712174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064290 1.123±0.76 0.121±0.09 0.203±0.06 0.051±0.02 1.075±0.10 0.231±0.13 0.042±0.01 0.092±0.04 7.864±6.05 0.326±0.11 0.032±0.00 0.706±0.31 0.096±0.04 0.114±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0002 VISTA 14:54638004-55241428
CIL_0006N2 CIL_0006N2_0002 CGP 14:54686171-54712174
CIL_0009BW CIL_0009BW_0002 VISTA 14:54696106-55297707
CIL_0008Q4 CIL_0008Q4_0002 VISTA 14:54696894-55297224
CIL_0008QH CIL_0008QH_0002 VISTA 14:54703667-55304830
CIL_0006MX CIL_0006MX_0002 CGP 14:54710363-54781886

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 ISO DNA binding
GO:0005634 ISO nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006909 IMP phagocytosis
GO:0010628 IDA positive regulation of gene expression
GO:0030099 IEA myeloid cell differentiation
GO:0030225 IMP macrophage differentiation
GO:0042089 IMP cytokine biosynthetic process
GO:0042742 IMP defense response to bacterium
GO:0042803 IEA protein homodimerization activity
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0071222 IEA cellular response to lipopolysaccharide

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000206513 CEBPE-001 protein_coding Homo_sapiens 0 1109

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