C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: junction-mediating and regulatory protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065537 Jmy-201 ENSMUSG00000021690 10090 - 13:93430097-93499808 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065537 8.840±5.84 7.784±2.40 8.934±0.93 4.620±0.45 3.189±0.60 3.775±0.85 4.259±0.38 4.348±0.33 2.054±0.40 3.882±1.17 4.283±0.35 12.563±4.00 3.831±1.36 5.242±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005O5 CIL_0005O5_0002 CGP 13:93430097-93637961

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IDA transcription coactivator activity
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006281 IEA DNA repair
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007050 IDA cell cycle arrest
GO:0031252 ISS cell leading edge
GO:0034314 IDA Arp2/3 complex-mediated actin nucleation
GO:0043065 IDA positive regulation of apoptotic process
GO:0043620 TAS regulation of DNA-templated transcription in response to stress
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070060 IDA 'de novo' actin filament nucleation
GO:0070358 IDA actin polymerization-dependent cell motility
GO:0072332 IDA intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396137 JMY-001 protein_coding Homo_sapiens 0 3197
ENST00000412001 JMY-002 processed_transcript Homo_sapiens 3e-19 99

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