C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-glutamyl carboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065906 Ggcx-001 ENSMUSG00000053460 10090 + 6:72414308-72430712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065906
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065906 17.334±0.27 16.786±7.16 10.282±2.36 3.114±0.79 11.444±1.36 9.916±2.34 7.895±1.06 8.497±0.91 21.512±10.07 23.000±5.42 1.749±0.24 11.403±3.89 11.004±5.38 0.712±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764
CIL_0009AX CIL_0009AX_0002 VISTA 6:72353769-72955984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0008488 ISS gamma-glutamyl carboxylase activity
GO:0016021 IEA integral component of membrane
GO:0017187 IEA peptidyl-glutamic acid carboxylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233838 GGCX-001 protein_coding Homo_sapiens 0 2619
ENST00000421496 GGCX-009 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000423570 GGCX-002 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000428479 GGCX-005 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000430215 GGCX-007 protein_coding Homo_sapiens 0 2490
ENST00000473665 GGCX-010 processed_transcript Homo_sapiens 0 769
ENST00000481541 GGCX-004 processed_transcript Homo_sapiens 0 215
ENST00000482662 GGCX-012 processed_transcript Homo_sapiens 0 453
ENST00000496962 GGCX-003 processed_transcript Homo_sapiens 0 344

Loading