C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 3110082I17 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066052 3110082I17Rik-001 ENSMUSG00000053553 10090 - 5:139359739-139460502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066052
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066052 4.749±1.98 3.341±1.62 6.437±0.85 5.803±0.79 2.684±1.33 2.630±0.97 1.409±0.17 1.888±0.75 6.264±5.70 2.884±0.67 3.537±0.59 9.030±2.36 9.613±6.17 11.188±8.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_0000ZU CIL_0000ZU_0002 CGP 5:139352617-139460502
CIL_0000ZR CIL_0000ZR_0002 CGP 5:139359739-139460502

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357429 C7orf50-001 protein_coding Homo_sapiens 0 241
ENST00000397098 C7orf50-002 protein_coding Homo_sapiens 0 241
ENST00000397100 C7orf50-201 protein_coding Homo_sapiens 0 241
ENST00000412051 C7orf50-003 protein_coding Homo_sapiens 0 241
ENST00000444428 C7orf50-005 protein_coding Homo_sapiens 0 241
ENST00000488073 C7orf50-006 processed_transcript Homo_sapiens 0 241
ENST00000491163 C7orf50-007 protein_coding Homo_sapiens 0 219

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