C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066081 Smad1-003 ENSMUSG00000031681 10090 - 8:79355356-79399518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENSMUST00000066081
Transcript ID Placenta
ENSMUST00000066081 0.681±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IMP MAPK cascade
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001710 IGI mesodermal cell fate commitment
GO:0002051 IGI osteoblast fate commitment
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006468 IDA protein phosphorylation
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0007276 IMP gamete generation
GO:0008285 IMP negative regulation of cell proliferation
GO:0010628 IMP positive regulation of gene expression
GO:0030509 TAS BMP signaling pathway
GO:0030901 IMP midbrain development
GO:0030902 IMP hindbrain development
GO:0042592 IMP homeostatic process
GO:0043234 ISO protein complex
GO:0045669 IGI positive regulation of osteoblast differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051216 IGI cartilage development
GO:0060038 IGI cardiac muscle cell proliferation
GO:0060348 IGI bone development
GO:0061036 IDA positive regulation of cartilage development
GO:0071407 IDA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302085 SMAD1-001 protein_coding Homo_sapiens 0 839
ENST00000394092 SMAD1-015 protein_coding Homo_sapiens 0 830
ENST00000506626 SMAD1-017 processed_transcript Homo_sapiens 1e-28 130
ENST00000512019 SMAD1-007 protein_coding Homo_sapiens 0 527
ENST00000515385 SMAD1-002 protein_coding Homo_sapiens 0 830
ENST00000515527 SMAD1-016 processed_transcript Homo_sapiens 1.4013e-45 187

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