C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REST corepressor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066646 Rcor2-001 ENSMUSG00000024968 10090 + 19:7268301-7275225 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066646 3.135±0.67 1.225±0.49 0.651±0.23 27.311±22.79 3.281±0.79 0.531±0.22 1.670±0.53 0.388±0.09 0.769±0.40 0.473±0.18 0.136±0.00 3.027±0.87 1.598±0.92 1.299±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104498 rcor3-201 protein_coding Danio_rerio 5.60519e-45 187
ENSDART00000143792 rcor3-001 protein_coding Danio_rerio 5.60519e-45 187
ENST00000301459 RCOR2-001 protein_coding Homo_sapiens 0 2241
ENST00000489217 RCOR2-003 retained_intron Homo_sapiens 0 472
ENST00000548294 RP11-74K11.1-001 processed_pseudogene Homo_sapiens 0 638

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