C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell adhesion molecule with homology to L1CAM
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066905 Chl1-201 ENSMUSG00000030077 10090 + 6:103510876-103733035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066905
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066905 0.091±0.03 0.644±0.36 21.898±13.06 0.196±0.10 0.316±0.11 0.207±0.03 0.102±0.04 0.018±0.02 0.092±0.02 0.046±0.02 0.072±0.03 0.014±0.01 10.918±2.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050I CIL_00050I_0002 CGP 6:103510876-104863406

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0002020 IPI protease binding
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005886 TAS plasma membrane
GO:0007411 IMP axon guidance
GO:0008344 IMP adult locomotory behavior
GO:0016021 IEA integral component of membrane
GO:0030425 IDA dendrite
GO:0031103 IEA axon regeneration
GO:0031175 IDA neuron projection development
GO:0035640 IMP exploration behavior
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0045177 IDA apical part of cell
GO:0050890 IMP cognition
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256509 CHL1-001 protein_coding Homo_sapiens 0 2974
ENST00000397491 CHL1-002 protein_coding Homo_sapiens 0 3651
ENST00000421198 CHL1-007 protein_coding Homo_sapiens 0 257
ENST00000427688 CHL1-006 protein_coding Homo_sapiens 0 189
ENST00000435603 CHL1-008 protein_coding Homo_sapiens 0 508
ENST00000445697 CHL1-013 protein_coding Homo_sapiens 0 732
ENST00000449294 CHL1-010 protein_coding Homo_sapiens 0 226
ENST00000453040 CHL1-003 nonsense_mediated_decay Homo_sapiens 0 3334
ENST00000461289 CHL1-014 processed_transcript Homo_sapiens 0 320
ENST00000620033 CHL1-201 protein_coding Homo_sapiens 0 2261

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