C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein, associated protein B and C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067530 Vapb-001 ENSMUSG00000054455 10090 + 2:173737511-173784336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067530 12.385±1.74 15.874±2.81 5.990±0.71 8.020±2.99 8.388±1.35 9.408±0.40 7.542±0.39 11.696±0.67 6.137±1.55 11.175±0.66 7.798±3.74 9.899±2.75 6.248±3.35 4.528±1.59

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005794 ISS Golgi apparatus
GO:0006874 IEA cellular calcium ion homeostasis
GO:0006987 IEA activation of signaling protein activity involved in unfolded protein response
GO:0019048 ISS modulation by virus of host morphology or physiology
GO:0019899 ISS enzyme binding
GO:0030968 ISS endoplasmic reticulum unfolded protein response
GO:0042803 ISS protein homodimerization activity
GO:0045070 ISS positive regulation of viral genome replication
GO:0046982 ISS protein heterodimerization activity
GO:0048487 ISS beta-tubulin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265619 VAPB-004 processed_transcript Homo_sapiens 0 632
ENST00000395802 VAPB-002 protein_coding Homo_sapiens 0 374
ENST00000463370 VAPB-003 processed_transcript Homo_sapiens 0 804
ENST00000475243 VAPB-001 protein_coding Homo_sapiens 0 1081
ENST00000476395 VAPB-005 retained_intron Homo_sapiens 0 494
ENST00000520497 VAPB-006 nonsense_mediated_decay Homo_sapiens 0 470

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