C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 13A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068156 Vps13a-201 ENSMUSG00000046230 10090 - 19:16616763-16780822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068156
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068156 1.151±0.20 2.107±0.00 1.075±0.67 1.675±0.38 0.791±0.36 1.115±0.16 0.743±0.25 0.742±0.46 1.501±0.31 0.753±0.24 1.713±0.89 1.223±0.32 5.700±2.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021O CIL_00021O_0002 CGP 19:16435667-16780822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0007399 IMP nervous system development
GO:0007626 IMP locomotory behavior
GO:0015031 IEA protein transport
GO:0031045 IDA dense core granule
GO:0035176 IMP social behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357409 VPS13A-006 protein_coding Homo_sapiens 0 9341
ENST00000360280 VPS13A-005 protein_coding Homo_sapiens 0 9775
ENST00000376634 VPS13A-001 protein_coding Homo_sapiens 0 9343
ENST00000376636 VPS13A-010 protein_coding Homo_sapiens 0 6521
ENST00000376646 VPS13A-009 protein_coding Homo_sapiens 0 438
ENST00000419472 VPS13A-002 protein_coding Homo_sapiens 0 1216
ENST00000423463 VPS13A-011 processed_transcript Homo_sapiens 0 2381
ENST00000484581 VPS13A-004 protein_coding Homo_sapiens 0 435
ENST00000493341 VPS13A-007 nonsense_mediated_decay Homo_sapiens 0 1201
ENST00000539950 VPS13A-013 retained_intron Homo_sapiens 0 292

Loading