C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: complement component 1, r subcomponent A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068593 C1ra-201 ENSMUSG00000055172 10090 + 6:124512632-124523440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068593 16.854±4.02 9.117±2.28 29.187±4.22 0.109±0.11 20.264±0.93 7.021±0.73 3.649±0.82 5.780±2.28 22.936±15.30 14.786±4.36 2.148±0.89 11.567±4.97 0.704±0.47 1.242±0.46

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0006508 IEA proteolysis
GO:0006958 IEA complement activation, classical pathway
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000535233 C1R-003 protein_coding Homo_sapiens 0 1688
ENST00000536053 C1R-004 protein_coding Homo_sapiens 0 2019
ENST00000536092 C1R-008 retained_intron Homo_sapiens 0 246
ENST00000538050 C1R-013 protein_coding Homo_sapiens 0 518
ENST00000539803 C1RL-009 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000540242 C1R-009 protein_coding Homo_sapiens 0 521
ENST00000540394 C1R-002 retained_intron Homo_sapiens 0 1160
ENST00000540610 C1R-006 protein_coding Homo_sapiens 0 453
ENST00000541042 C1R-007 protein_coding Homo_sapiens 0 580
ENST00000542285 C1R-001 protein_coding Homo_sapiens 0 2113
ENST00000543362 C1R-012 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000543835 C1R-011 protein_coding Homo_sapiens 0 305
ENST00000543851 C1R-014 retained_intron Homo_sapiens 0 279
ENST00000545466 C1R-010 retained_intron Homo_sapiens 0 518

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