C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative regulator of ubiquitin-like proteins 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068825 Nub1-201 ENSMUSG00000028954 10090 + 5:24685815-24710555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068825
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068825 17.678±8.36 41.298±1.51 7.088±1.36 19.435±2.67 30.031±8.20 21.840±8.27 10.916±1.18 19.780±4.57 8.462±3.29 27.941±9.28 3.589±2.06 32.096±12.39 25.731±11.24 13.797±5.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0004EL CIL_0004EL_0002 CGP 5:24590818-24710555
CIL_0004EK CIL_0004EK_0002 CGP 5:24685815-24730727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0016567 ISS protein ubiquitination
GO:0032436 ISS positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034341 IEA response to interferon-gamma
GO:0034612 IEA response to tumor necrosis factor

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000413040 NUB1-001 protein_coding Homo_sapiens 0 1367
ENST00000468404 NUB1-003 nonsense_mediated_decay Homo_sapiens 0 734
ENST00000470316 NUB1-005 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000477666 NUB1-011 processed_transcript Homo_sapiens 0 451
ENST00000480714 NUB1-013 protein_coding Homo_sapiens 8e-32 141
ENST00000480907 NUB1-010 retained_intron Homo_sapiens 0 935
ENST00000483358 NUB1-008 protein_coding Homo_sapiens 0 702
ENST00000493588 NUB1-009 retained_intron Homo_sapiens 0 510
ENST00000497987 NUB1-012 retained_intron Homo_sapiens 0 664
ENST00000568733 NUB1-002 protein_coding Homo_sapiens 0 1696

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