C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 180
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069686 Rnf180-201 ENSMUSG00000021720 10090 - 13:105149352-105271039 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069686
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069686 0.406±0.08 0.379±0.00 2.643±0.52 0.744±0.20 1.142±0.68 0.150±0.02 0.392±0.04 0.085±0.03 0.846±0.21 0.058±0.03 3.496±1.31 0.325±0.10 3.201±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005HF CIL_0005HF_0002 CGP 13:105149352-105448133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IDA protein polyubiquitination
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016874 IEA ligase activity
GO:0030534 IMP adult behavior
GO:0031227 IDA intrinsic component of endoplasmic reticulum membrane
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0031624 IDA ubiquitin conjugating enzyme binding
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042415 IMP norepinephrine metabolic process
GO:0042428 IMP serotonin metabolic process
GO:0050790 IMP regulation of catalytic activity
GO:1901360 IMP organic cyclic compound metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296615 RNF180-002 protein_coding Homo_sapiens 0 1142
ENST00000389100 RNF180-001 protein_coding Homo_sapiens 0 1511
ENST00000504296 RNF180-003 protein_coding Homo_sapiens 0 285

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