C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet-activating factor receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070690 Ptafr-001 ENSMUSG00000056529 10090 + 4:132564067-132582683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070690
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070690 9.538±0.96 1.646±0.33 4.713±0.55 0.172±0.04 15.632±0.72 3.523±0.81 1.382±0.10 0.848±0.17 0.660±0.29 3.221±0.50 0.243±0.04 4.094±1.47 0.686±0.55 0.117±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001530 IMP lipopolysaccharide binding
GO:0001816 IMP cytokine production
GO:0001875 IMP lipopolysaccharide receptor activity
GO:0004992 IEA platelet activating factor receptor activity
GO:0005543 IEA phospholipid binding
GO:0005886 IEA plasma membrane
GO:0006935 IEA chemotaxis
GO:0006954 IMP inflammatory response
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031663 IMP lipopolysaccharide-mediated signaling pathway
GO:0032496 IMP response to lipopolysaccharide
GO:0032959 IMP inositol trisphosphate biosynthetic process
GO:0048015 IEA phosphatidylinositol-mediated signaling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305392 PTAFR-002 protein_coding Homo_sapiens 0 924
ENST00000373857 PTAFR-001 protein_coding Homo_sapiens 0 976
ENST00000539896 PTAFR-201 protein_coding Homo_sapiens 0 924

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