C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor, interleukin 3, regulated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071065 Nfil3-001 ENSMUSG00000056749 10090 - 13:52967209-52981073 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071065 3.643±1.71 5.604±0.47 0.748±0.05 4.188±1.05 2.343±0.99 2.097±0.17 2.063±0.35 2.175±0.22 4.117±3.27 1.997±0.29 7.687±5.22 4.395±0.99 4.617±2.38 0.734±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068X CIL_00068X_0002 CGP 13:52835119-52981073
CIL_00068R CIL_00068R_0002 CGP 13:52967209-53286124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007623 IEA circadian rhythm
GO:0010628 IDA positive regulation of gene expression
GO:0071353 IDA cellular response to interleukin-4

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297689 NFIL3-001 protein_coding Homo_sapiens 0 1105

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