C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomodulin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072232 Tmod3-201 ENSMUSG00000058587 10090 - 9:75497796-75559657 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072232 18.694±3.88 6.280±0.84 21.302±6.43 9.894±5.07 15.665±3.81 16.787±3.69 7.549±0.45 9.203±0.67 6.842±2.59 34.247±2.92 3.655±0.32 17.727±2.34 25.474±8.91 3.206±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072B CIL_00072B_0002 CGP 9:75441524-75559657

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IDA tropomyosin binding
GO:0005865 IDA striated muscle thin filament
GO:0030036 IMP actin cytoskeleton organization
GO:0048821 IMP erythrocyte development
GO:1901992 IMP positive regulation of mitotic cell cycle phase transition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308580 TMOD3-001 protein_coding Homo_sapiens 0 1325
ENST00000544199 TMOD3-201 protein_coding Homo_sapiens 0 1325
ENST00000560549 TMOD3-002 nonsense_mediated_decay Homo_sapiens 0 883
ENST00000560725 TMOD3-004 processed_transcript Homo_sapiens 0 231
ENST00000561438 TMOD3-005 nonsense_mediated_decay Homo_sapiens 0 713

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