C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-Coenzyme A dehydrogenase, medium chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072697 Acadm-001 ENSMUSG00000062908 10090 - 3:153922357-153944632 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072697 48.489±22.11 39.667±13.52 39.966±2.85 11.161±2.11 46.330±4.45 15.173±3.35 252.704±26.55 181.581±27.13 74.869±50.70 19.130±7.46 123.574±10.08 23.374±23.86 56.222±15.01 4.462±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZQ CIL_0002ZQ_0002 CGP 3:153907289-153944632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 IMP liver development
GO:0003995 ISS acyl-CoA dehydrogenase activity
GO:0005739 IDA mitochondrion
GO:0005978 IMP glycogen biosynthetic process
GO:0006082 IMP organic acid metabolic process
GO:0006111 IMP regulation of gluconeogenesis
GO:0006635 ISS fatty acid beta-oxidation
GO:0007507 IMP heart development
GO:0009409 IMP response to cold
GO:0009437 IMP carnitine metabolic process
GO:0009791 IMP post-embryonic development
GO:0019254 IMP carnitine metabolic process, CoA-linked
GO:0033539 IMP fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 IMP response to starvation
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0051791 IMP medium-chain fatty acid metabolic process
GO:0055007 IMP cardiac muscle cell differentiation
GO:0070991 IMP medium-chain-acyl-CoA dehydrogenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370834 ACADM-002 protein_coding Homo_sapiens 0 950
ENST00000370841 ACADM-001 protein_coding Homo_sapiens 0 1138
ENST00000420607 ACADM-005 protein_coding Homo_sapiens 0 1101
ENST00000525808 ACADM-007 nonsense_mediated_decay Homo_sapiens 0 737
ENST00000526129 ACADM-009 nonsense_mediated_decay Homo_sapiens 0 1000
ENST00000526196 ACADM-006 nonsense_mediated_decay Homo_sapiens 0 1055
ENST00000526930 ACADM-013 retained_intron Homo_sapiens 0 436
ENST00000529059 ACADM-008 retained_intron Homo_sapiens 0 841
ENST00000530953 ACADM-016 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000532207 ACADM-014 retained_intron Homo_sapiens 0 414
ENST00000532509 ACADM-015 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000534334 ACADM-010 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000541113 ACADM-201 protein_coding Homo_sapiens 0 1055

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