C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleosome assembly protein 1-like 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072727 Nap1l4-201 ENSMUSG00000059119 10090 - 7:143513579-143549090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072727
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072727 24.289±2.64 23.535±14.64 32.705±2.49 56.470±32.34 21.289±8.27 12.168±2.19 33.985±3.83 18.537±7.76 18.581±14.64 20.030±4.92 31.867±13.84 30.970±16.72 32.818±12.80 18.453±5.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005LX CIL_0005LX_0003 CGP 7:143501545-143549090
CIL_0006OC CIL_0006OC_0003 CGP 7:143513579-143600090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006334 IEA nucleosome assembly
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319092 NAP1L4P1-001 processed_pseudogene Homo_sapiens 0 992
ENST00000380542 NAP1L4-001 protein_coding Homo_sapiens 0 1384
ENST00000469805 NAP1L4-010 retained_intron Homo_sapiens 2e-33 148
ENST00000483643 NAP1L4-006 retained_intron Homo_sapiens 0 496
ENST00000492685 NAP1L4-007 nonsense_mediated_decay Homo_sapiens 0 682
ENST00000526115 NAP1L4-002 protein_coding Homo_sapiens 0 1206
ENST00000528261 NAP1L4-014 retained_intron Homo_sapiens 0 268
ENST00000528363 NAP1L4-021 retained_intron Homo_sapiens 0 538
ENST00000616696 NAP1L4-202 protein_coding Homo_sapiens 0 1240
ENST00000619695 NAP1L4-203 protein_coding Homo_sapiens 0 1384
ENST00000620138 NAP1L4-201 protein_coding Homo_sapiens 0 1240

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