C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 9 (sodium/hydrogen exchanger), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073149 Slc9a5-201 ENSMUSG00000014786 10090 + 8:105348258-105369881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073149 0.692±0.13 0.778±0.13 0.855±0.43 13.029±7.12 0.926±0.27 1.289±0.07 0.160±0.06 0.313±0.10 0.151±0.10 1.326±0.61 0.560±0.18 0.421±0.11 2.271±1.11 10.380±4.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003M0 CIL_0003M0_0003 CGP 8:105329163-105369881
CIL_0005JZ CIL_0005JZ_0003 CGP 8:105348258-105382862

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0006885 IEA regulation of pH
GO:0015385 IEA sodium:proton antiporter activity
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:1902600 IEA hydrogen ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299798 SLC9A5-001 protein_coding Homo_sapiens 0 3526
ENST00000561472 SLC9A5-009 processed_transcript Homo_sapiens 0 309
ENST00000563723 SLC9A5-003 retained_intron Homo_sapiens 0 2614
ENST00000564704 SLC9A5-002 retained_intron Homo_sapiens 0 1591
ENST00000564812 SLC9A5-004 nonsense_mediated_decay Homo_sapiens 0 1482
ENST00000566345 SLC9A5-008 protein_coding Homo_sapiens 0 420
ENST00000566626 SLC9A5-006 protein_coding Homo_sapiens 0 743
ENST00000566638 SLC9A5-007 retained_intron Homo_sapiens 0 577
ENST00000567247 SLC9A5-010 protein_coding Homo_sapiens 0 508

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