C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin VII
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073899 Syt7-201 ENSMUSG00000024743 10090 + 19:10389090-10453181 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000073899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000073899 0.554±0.18 1.158±0.41 0.186±0.07 5.511±0.00 0.439±0.32 1.640±0.00 0.771±0.00 0.817±0.18 0.111±0.05 0.155±0.07 6.156±2.55 0.216±0.15 0.945±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001778 IDA plasma membrane repair
GO:0005215 IEA transporter activity
GO:0005764 IDA lysosome
GO:0006887 IEA exocytosis
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000101231 syt7b-201 protein_coding Danio_rerio 0 568
ENSDART00000093003 SYT7 (1 of 2)-201 protein_coding Danio_rerio 0 481
ENSDART00000154038 SYT7 (1 of 2)-001 protein_coding Danio_rerio 0 481
ENST00000263846 SYT7-001 protein_coding Homo_sapiens 0 2673
ENST00000492450 ZNF181-002 protein_coding Homo_sapiens 0.0003 53
ENST00000535826 SYT7-006 protein_coding Homo_sapiens 0 1432
ENST00000539008 SYT7-007 protein_coding Homo_sapiens 0 1426
ENST00000539246 SYT7-004 nonsense_mediated_decay Homo_sapiens 0 1426
ENST00000539468 SYT7-005 nonsense_mediated_decay Homo_sapiens 0 1426
ENST00000540677 SYT7-003 protein_coding Homo_sapiens 0 1893
ENST00000540831 SYT7-009 processed_transcript Homo_sapiens 0 333
ENST00000542670 SYT7-002 protein_coding Homo_sapiens 0 1426
ENST00000542836 SYT7-008 protein_coding Homo_sapiens 0 1434
ENST00000545053 SYT7-011 protein_coding Homo_sapiens 0 819

Loading