C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing regulatory glutamine/lysine-rich protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074616 Srek1-201 ENSMUSG00000032621 10090 - 13:103741615-103764504 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074616
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074616 2.824±0.77 3.095±0.78 25.641±1.84 14.591±0.13 2.179±0.97 2.905±1.13 1.194±0.61 1.948±1.05 6.646±3.70 2.617±1.05 3.763±0.66 6.135±3.85 9.260±4.12 2.107±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OR CIL_0001OR_0002 CGP 13:102732486-103764504

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005739 IEA mitochondrion
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284041 SREK1-009 processed_transcript Homo_sapiens 0 1328
ENST00000334121 SREK1-001 protein_coding Homo_sapiens 0 1327
ENST00000380918 SREK1-002 protein_coding Homo_sapiens 0 1328
ENST00000518110 SREK1-011 retained_intron Homo_sapiens 0 1066
ENST00000519259 SREK1-007 retained_intron Homo_sapiens 0 1000
ENST00000520580 SREK1-006 retained_intron Homo_sapiens 0 817
ENST00000520953 SREK1-004 nonsense_mediated_decay Homo_sapiens 0 1328
ENST00000521691 SREK1-003 protein_coding Homo_sapiens 0 327
ENST00000522912 SREK1-005 nonsense_mediated_decay Homo_sapiens 0 1328
ENST00000523655 SREK1-012 nonsense_mediated_decay Homo_sapiens 0 220
ENST00000524111 SREK1-016 retained_intron Homo_sapiens 0 1227

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