C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076734 Scaf8-201 ENSMUSG00000046201 10090 + 17:3114972-3198855 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076734 8.210±6.15 16.275±1.42 13.791±3.53 12.892±4.67 11.578±6.26 10.201±2.56 6.541±0.96 10.778±1.73 7.788±4.17 13.765±1.14 3.604±0.20 18.493±5.56 10.303±3.45 4.485±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055J CIL_00055J_0002 CGP 17:3114972-3519397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016363 ISS nuclear matrix
GO:0043175 IEA RNA polymerase core enzyme binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000367178 SCAF8-001 protein_coding Homo_sapiens 0 5363
ENST00000367186 SCAF8-201 protein_coding Homo_sapiens 0 5264
ENST00000417268 SCAF8-202 protein_coding Homo_sapiens 0 5363
ENST00000461219 SCAF8-002 processed_transcript Homo_sapiens 0 739
ENST00000461783 TIAM2-005 protein_coding Homo_sapiens 0 974
ENST00000464628 SCAF8-003 processed_transcript Homo_sapiens 0 527

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