C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078271 Pcdhb5-201 ENSMUSG00000063687 10090 + 18:37320381-37323913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078271
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078271 1.133±0.64 0.490±0.08 0.349±0.03 1.523±0.17 0.707±0.00 0.244±0.08 0.318±0.07 0.228±0.06 0.034±0.01 1.217±0.29 0.071±0.03 2.058±1.02 0.045±0.04 0.046±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000N CGP 18:37307455-37323913
CIL_00062S CIL_00062S_0010 CGP 18:37320381-37336398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000194152 PCDHB4-001 protein_coding Homo_sapiens 0 2047
ENST00000543635 PCDHB3-201 protein_coding Homo_sapiens 0 1258

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