C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000194152 PCDHB4-001 ENSG00000081818 9606 + 5:141121799-141125623 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryENST00000194152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000194152 3.359±0.00 1.264±0.00 0.865±0.00 3.716±1.98 1.493±0.00 2.248±0.00 1.036±0.00 0.896±0.81 1.239±0.00 1.633±0.76 0.147±0.00 1.932±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_0004 CGP 5:141094578-141152636
CIL_00062S CIL_00062S_0005 CGP 5:141100473-141152636
CIL_00062S CIL_00062S_0003 CGP 5:141121799-141138625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007399 TAS nervous system development
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0045111 IDA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078271 Pcdhb5-201 protein_coding Mus_musculus 0 2047
ENSMUST00000053037 Pcdhb7-201 protein_coding Mus_musculus 0 1919
ENSMUST00000057228 Pcdhb9-201 protein_coding Mus_musculus 0 1836
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 1107
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 1090
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 1062
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 976
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 965
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 894
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 835

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