C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tonsoku-like, DNA repair protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078803 Tonsl-201 ENSMUSG00000059323 10090 - 15:76622088-76626027 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078803 74.254±20.94 95.841±12.60 92.165±3.81 73.041±9.93 71.171±27.38 133.105±52.92 70.638±5.16 95.676±22.74 52.117±16.36 84.558±42.71 35.825±3.74 95.054±21.54 60.272±13.35 55.532±18.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_00026P CIL_00026P_0002 CGP 15:76622088-76660117

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000813 ISS ESCRT I complex
GO:0005737 ISS cytoplasm
GO:0005886 IEA plasma membrane
GO:0015031 IEA protein transport
GO:0031397 ISS negative regulation of protein ubiquitination
GO:0043162 ISS ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123932 vps28-201 protein_coding Danio_rerio 0 468
ENSDART00000067536 vps28-001 protein_coding Danio_rerio 5e-25 119
ENST00000292510 VPS28-201 protein_coding Homo_sapiens 0 798
ENST00000377348 VPS28-202 protein_coding Homo_sapiens 0 676
ENST00000526054 VPS28-003 protein_coding Homo_sapiens 0 798
ENST00000526204 VPS28-008 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000526734 VPS28-013 processed_transcript Homo_sapiens 0 243
ENST00000526977 VPS28-004 retained_intron Homo_sapiens 0.00000000000001 86
ENST00000527797 VPS28-007 retained_intron Homo_sapiens 0 433
ENST00000528142 VPS28-001 retained_intron Homo_sapiens 0 597
ENST00000529182 VPS28-002 protein_coding Homo_sapiens 0 676
ENST00000530790 VPS28-014 protein_coding Homo_sapiens 0 196
ENST00000530836 VPS28-006 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000530983 VPS28-005 retained_intron Homo_sapiens 0 313
ENST00000531032 VPS28-012 protein_coding Homo_sapiens 0 601
ENST00000531924 VPS28-016 retained_intron Homo_sapiens 0.000000000000001 88
ENST00000533806 VPS28-011 protein_coding Homo_sapiens 0 420

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