C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lethal, Chr 7, Rinchik 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078918 l7Rn6-003 ENSMUSG00000062797 10090 - 7:89918703-89941066 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverMuscleOvaryPlacentaTestisENSMUST00000078918
Transcript ID Bladder Liver Muscle Ovary Placenta Testis
ENSMUST00000078918 2.426±0.02 2.426±0.34 5.302±1.22 4.514±0.11 9.279±7.87 1.482±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073O CIL_00073O_0002 CGP 7:89917529-89980983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0007030 IMP Golgi organization
GO:0030324 IMP lung development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278483 C11orf73-001 protein_coding Homo_sapiens 0 464
ENST00000445047 RP11-654E17.2-001 processed_pseudogene Homo_sapiens 2e-37 159
ENST00000528004 C11orf73-004 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000529405 C11orf73-008 retained_intron Homo_sapiens 0 303
ENST00000530208 C11orf73-003 processed_transcript Homo_sapiens 0 392
ENST00000531485 C11orf73-006 processed_transcript Homo_sapiens 0 464
ENST00000532270 C11orf73-007 processed_transcript Homo_sapiens 0 387
ENST00000533986 C11orf73-002 protein_coding Homo_sapiens 0 442
ENST00000590455 AC007229.3-001 processed_pseudogene Homo_sapiens 1e-33 147
ENST00000618164 C11orf73-201 protein_coding Homo_sapiens 0 464

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