C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lethal, Chr 7, Rinchik 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062797 l7Rn6 10090 - 7:89917529-89941199 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000075010 l7Rn6-006 89918920-89941084 protein_coding
  ENSMUST00000078918 l7Rn6-003 89918703-89941066 nonsense_mediated_decay
  ENSMUST00000117354 l7Rn6-002 89918924-89941199 protein_coding
  ENSMUST00000130609 l7Rn6-004 89930312-89941165 processed_transcript
  ENSMUST00000150740 l7Rn6-005 89919572-89923715 retained_intron
  ENSMUST00000153470 l7Rn6-001 89917529-89941185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075010ENSMUST00000078918ENSMUST00000117354ENSMUST00000130609ENSMUST00000150740ENSMUST00000153470
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075010 4.819±0.59 N/A N/A 5.248±0.11 9.382±3.53 N/A 5.381±0.98 4.983±1.26 3.375±0.97 N/A N/A 3.414±0.91 6.275±3.51 2.048±0.57
ENSMUST00000078918 N/A N/A 2.426±0.02 N/A N/A N/A N/A N/A 2.426±0.34 N/A 5.302±1.22 4.514±0.11 9.279±7.87 1.482±0.82
ENSMUST00000117354 12.360±1.59 6.554±2.31 7.106±0.59 14.736±4.96 13.337±4.22 9.832±3.31 19.180±1.73 17.652±2.76 9.737±2.72 8.766±3.84 N/A 9.136±2.21 14.564±2.74 2.642±0.66
ENSMUST00000130609 N/A 6.176±1.55 N/A 15.711±0.00 N/A 5.586±0.00 N/A N/A 6.217±1.20 N/A N/A 13.184±5.92 N/A 4.941±0.00
ENSMUST00000150740 N/A 16.482±6.19 N/A N/A 5.869±1.34 7.445±2.16 N/A N/A N/A N/A N/A 8.541±3.80 N/A N/A
ENSMUST00000153470 2.574±0.84 2.991±0.84 1.442±0.06 3.782±2.53 3.746±1.05 3.437±0.96 2.550±0.62 3.959±0.59 3.364±1.46 2.952±1.16 3.424±0.85 2.639±1.36 0.864±0.45 1.142±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073O CIL_00073O_0002 CGP 7:89917529-89980983

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005622 ISS intracellular
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0006606 ISS protein import into nucleus
GO:0007030 IMP Golgi organization
GO:0008565 ISS protein transporter activity
GO:0015031 ISS protein transport
GO:0030054 IEA cell junction
GO:0030324 IMP lung development
GO:0030544 ISS Hsp70 protein binding
GO:0034605 ISS cellular response to heat
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040546 C1H11orf73 chromosome 11 open reading frame 73 protein_coding Danio_rerio
ENSG00000149196 C11orf73 chromosome 11 open reading frame 73 protein_coding Homo_sapiens

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