C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079634 Exosc5-201 ENSMUSG00000061286 10090 + 7:25659153-25668031 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079634 28.162±2.90 46.492±3.44 26.767±5.09 11.252±6.29 32.986±17.31 27.827±2.30 7.077±1.96 27.465±2.49 26.918±5.89 20.766±3.13 13.581±2.33 29.138±12.50 12.331±6.29 188.821±82.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TR CIL_0008TR_0002 VISTA 7:25324415-25925712

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000178 ISS exosome (RNase complex)
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006401 IMP RNA catabolic process
GO:0035327 IEA transcriptionally active chromatin
GO:0043928 IEA exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0045006 IEA DNA deamination
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221233 EXOSC5-001 protein_coding Homo_sapiens 0 734
ENST00000593523 EXOSC5-002 retained_intron Homo_sapiens 0 355
ENST00000593771 EXOSC5-004 protein_coding Homo_sapiens 0 252
ENST00000596905 EXOSC5-005 protein_coding Homo_sapiens 0 484
ENST00000602129 EXOSC5-003 protein_coding Homo_sapiens 0 200

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