C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221233 EXOSC5-001 ENSG00000077348 9606 - 19:41386374-41397479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainMuscleOvaryPlacentaENST00000221233
Transcript ID Adrenal Brain Muscle Ovary Placenta
ENST00000221233 24.107±0.00 10.787±5.05 25.718±0.00 23.511±1.64 26.806±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TR CIL_0008TR_0001 VISTA 19:41131081-41732986
CIL_0003UM CIL_0003UM_0002 CGP 19:41386374-41431345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 NAS 3'-5'-exoribonuclease activity
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005730 NAS nucleolus
GO:0005737 NAS cytoplasm
GO:0005829 TAS cytosol
GO:0006364 NAS rRNA processing
GO:0006401 IEA RNA catabolic process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035327 IMP transcriptionally active chromatin
GO:0043928 IMP exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0045006 IDA DNA deamination
GO:0051607 IMP defense response to virus
GO:0090503 NAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079634 Exosc5-201 protein_coding Mus_musculus 0 734

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